Database contents:

Select page:  1 2 3 4 5 6 7 8

Download the entire database ed. Sep-17

Show structures' list >>

PDB file Author(s) Title Date Resolution, Å
2i2i.pdb Lee, M.P.H., Neidle, S.

Crystal structure of the
DB293-D(CGCGAATTCGCG)2
complex.

- 1.63
2qeg.pdb Wang, F., Li, F.,
Ganguly, M., Marky, L.A.,
Gold, B., Egli, M.,
Stone, M.P.

A bridging water anchors
the tethered
5-(3-aminopropyl)-2'-deoxyuridine
amine in the DNA major
groove proximate to the
N+2 C.G base pair:
implications for
formation of interstrand
5'-GNC-3' cross-links by
nitrogen mustards.

2008 1.6
307d.pdb Han, G.W., Kopka, M.L.,
Cascio, D., Grzeskowiak,
K., Dickerson, R.E.

Structure of a DNA analog
of the primer for HIV-1
RT second strand
synthesis.

1997 1.85
334d.pdb Kopka, M.L., Goodsell,
D.S., Han, G.W., Chiu,
T.K., Lown, J.W.,
Dickerson, R.E.

Defining GC-specificity
in the minor groove:
side-by-side binding of
the di-imidazole
lexitropsin to
C-A-T-G-G-C-C-A-T-G.

1997 1.8
355d.pdb Shui, X., McFail-Isom,
L., Hu, G.G., Williams,
L.D.

The B-DNA dodecamer at
high resolution reveals a
spine of water on sodium.

1998 1.4
360d.pdb Guerri, A., Simpson,
I.J., Neidle, S.

Visualisation of
extensive water ribbons
and networks in a DNA
minor-groove drug
complex.

1998 1.85
3bse.pdb Narayana, N., Weiss, M.A.

Crystallographic Analysis
of a Sex-Specific
Enhancer Element:
Sequence-Dependent DNA
Structure, Hydration, and
Dynamics

2009 1.6
3u05.pdb Wei, D., Wilson, W.D.,
Neidle, S.

Small-molecule binding to
the DNA minor groove is
mediated by a conserved
water cluster.

2013 1.27
3u08.pdb Wei, D., Wilson, W.D.,
Neidle, S.

Small-molecule binding to
the DNA minor groove is
mediated by a conserved
water cluster.

2013 1.25
3u0u.pdb Wei, D., Wilson, W.D.,
Neidle, S.

Small-molecule binding to
the DNA minor groove is
mediated by a conserved
water cluster.

2013 1.24
3u2n.pdb Wei, D., Wilson, W.D.,
Neidle, S.

Small-molecule binding to
the DNA minor groove is
mediated by a conserved
water cluster.

2013 1.25
423d.pdb Rozenberg, H.,
Rabinovich, D., Frolow,
F., Hegde, R.S., Shakked,
Z.

Structural code for DNA
recognition revealed in
crystal structures of
papillomavirus E2-DNA
targets.

1998 1.6
428d.pdb Shui, X., Sines, C.C.,
McFail-Isom, L.,
VanDerveer, D., Williams,
L.D.

Structure of the
potassium form of
CGCGAATTCGCG: DNA
deformation by
electrostatic collapse
around inorganic cations.

1998 1.75
431d.pdb Vlieghe, D., Turkenburg,
J.P., Van Meervelt, L.

B-DNA at atomic
resolution reveals
extended hydration
patterns.

1999 1.15
432d.pdb Vlieghe, D., Sponer, J.,
Van Meervelt, L.

Crystal structure of
d(GGCCAATTGG) complexed
with DAPI reveals novel
binding mode.

1999 1.89
442d.pdb Squire, C.J., Baker,
L.J., Clark, G.R.,
Martin, R.F., White, J.

Structures of m-iodo
Hoechst-DNA complexes in
crystals with reduced
solvent content:
implications for minor
groove binder drug
design.

2000 1.6
443d.pdb Squire, C.J., Baker,
L.J., Clark, G.R.,
Martin, R.F., White, J.

Structures of m-iodo
Hoechst-DNA complexes in
crystals with reduced
solvent content:
implications for minor
groove binder drug
design.

2000 1.6
453d.pdb Neidle, S., Mann, J.,
Rayner, E.J., Baron, A.,
Opoku-Boahen, Y.,
Simpson, I.J., Smith,
N.J., Fox, K.R., Hartley,
J.A., Kelland, L.R.

Symmetric
bis-benzimidazoles, a new
class of
sequence-selective
DNA-binding molecules

1999 1.8
455d.pdb Chiu, T.K.,
Kaczor-Grzeskowiak, M.,
Dickerson, R.E.

Absence of minor groove
monovalent cations in the
crosslinked dodecamer
C-G-C-G-A-A-T-T-C-G-C-G.

1999 1.43
463d.pdb Liu, J., Subirana, J.A.

Structure of
d(CGCGAATTCGCG) in the
presence of Ca(2+) ions.

1999 1.45
473d.pdb Abrescia, N.G., Malinina,
L., Subirana, J.A.

Stacking interaction of
guanine with netropsin in
the minor groove of
d(CGTATATACG)2.

1999 1.58
476d.pdb Minasov, G., Tereshko,
V., Egli, M.

Atomic-resolution crystal
structures of B-DNA
reveal specific
influences of divalent
metal ions on
conformation and packing.

1999 1.3
477d.pdb Minasov, G., Tereshko,
V., Egli, M.

Atomic-resolution crystal
structures of B-DNA
reveal specific
influences of divalent
metal ions on
conformation and packing.

1999 1.7
4agz.pdb Munnur, D.G., Mitchell,
E.P., Forsyth, V.T.,
Teixeira, S.C.M., Neidle,
S.

A Detailed Study of Water
Network in the Minor
Groove of
D(Cgcgaattcgcg)2 and
D(Cgcaaatttgcg)2 in
Presence of Linear Groove
Binders

- 1.25
4ah1.pdb Munnur, D.G., Mitchell,
E.P., Forsyth, V.T.,
Teixeira, S.C.M., Neidle,
S.

A Detailed Study of Water
Network in the Minor
Groove of
D(Cgcgaattcgcg)2 and
D(Cgcaaatttgcg)2 in
Presence of Linear Groove
Binders

- 1.42

Select page:  1 2 3 4 5 6 7 8