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PDB file Author(s) Title Date Resolution, Å
3fde.pdb Hashimoto, H., Horton,
J.R., Zhang, X., Cheng,
X.

UHRF1, a modular
multi-domain protein,
regulates
replication-coupled
crosstalk between DNA
methylation and histone
modifications.

2009 1.41
3fdq.pdb Shen, A., Higgins, D.E.,
Panne, D.

Recognition of AT-Rich
DNA Binding Sites by the
MogR Repressor.

2009 1.75
3fsi.pdb Glass, L.S., Nguyen, B.,
Goodwin, K.D.,
Dardonville, C., Wilson,
W.D., Long, E.C.,
Georgiadis, M.M.

Crystal structure of a
trypanocidal
4,4'-bis(imidazolinylamino)diphenylamine
bound to DNA.

2009 1.75
3g00.pdb Lakomek, K., Dickmanns,
A., Ciirdaeva, E.,
Schomacher, L., Ficner,
R.

Crystal Structure
Analysis of DNA Uridine
Endonuclease Mth212 Bound
to DNA

2010 1.74
3g00_1.pdb Lakomek, K., Dickmanns,
A., Ciirdaeva, E.,
Schomacher, L., Ficner,
R.

Crystal Structure
Analysis of DNA Uridine
Endonuclease Mth212 Bound
to DNA

2010 1.74
3g9m.pdb Meijsing, S.H., Pufall,
M.A., So, A.Y., Bates,
D.L., Chen, L., Yamamoto,
K.R.

DNA binding site sequence
directs glucocorticoid
receptor structure and
activity.

2009 1.61
3gox.pdb Sokolowska, M.,
Czapinska, H., Bochtler,
M.

Crystal structure of the
beta beta alpha-Me type
II restriction
endonuclease Hpy99I with
target DNA.

2009 1.5
3hts.pdb Littlefield, O., Nelson,
H.C.

A new use for the 'wing'
of the 'winged'
helix-turn-helix motif in
the HSF-DNA cocrystal.

1999 1.75
3i0w.pdb Faucher, F., Wallace,
S.S., Doublie, S.

Structural basis for the
lack of opposite base
specificity of
Clostridium
acetobutylicum
8-oxoguanine DNA
glycosylase.

2009 1.73
3i0w_1.pdb Faucher, F., Wallace,
S.S., Doublie, S.

Structural basis for the
lack of opposite base
specificity of
Clostridium
acetobutylicum
8-oxoguanine DNA
glycosylase.

2009 1.73
3i8d.pdb Pallan, P.S., Egli, M.

Pairing geometry of the
hydrophobic thymine
analogue
2,4-difluorotoluene in
duplex DNA as analyzed by
X-ray crystallography.

2009 1.61
3i8d.pdb Pallan, P.S., Egli, M.

Pairing geometry of the
hydrophobic thymine
analogue
2,4-difluorotoluene in
duplex DNA as analyzed by
X-ray crystallography.

2009 1.61
3igk.pdb Kitayner, M., Rozenberg,
H., Rohs, R., Suad, O.,
Rabinovich, D., Honig,
B., Shakked, Z.

Diversity in DNA
recognition by p53
revealed by crystal
structures with Hoogsteen
base pairs

2010 1.7
3jxy.pdb Rubinson, E.H., Gowda,
A.S., Spratt, T.E., Gold,
B., Eichman, B.F.

An unprecedented nucleic
acid capture mechanism
for excision of DNA
damage.

2010 1.5
3kde.pdb Sabogal, A., Lyubimov,
A.Y., Corn, J.E., Berger,
J.M., Rio, D.C.

THAP proteins target
specific DNA sites
through bipartite
recognition of adjacent
major and minor grooves.

2010 1.74
3kxt.pdb Feng, Y., Yao, H., Wang,
J.

Crystal structure of the
crenarchaeal conserved
chromatin protein Cren7
and double-stranded DNA
complex

2010 1.6
3l2c.pdb Boura, E., Rezabkova, L.,
Brynda, J., Obsilova, V.,
Obsil, T.

Structure of the human
FOXO4-DBD-DNA complex at
1.9 A resolution reveals
new details of FOXO
binding to the DNA

2010 1.86
3m4a.pdb Patel, A., Yakovleva, L.,
Shuman, S., Mondragon, A.

Crystal structure of a
bacterial topoisomerase
IB in complex with DNA
reveals a secondary DNA
binding site.

2010 1.65
3mr3.pdb Biertumpfel, C., Zhao,
Y., Kondo, Y.,
Ramon-Maiques, S.,
Gregory, M., Lee, J.Y.,
Masutani, C., Lehmann,
A.R., Hanaoka, F., Yang,
W.

Structure and mechanism
of human DNA polymerase
eta.

2010 1.75
3ndh.pdb Firczuk, M.,
Wojciechowski, M.,
Czapinska, H., Bochtler,
M.

DNA intercalation without
flipping in the specific
ThaI-DNA complex

2011 1.3
3o1p.pdb Yi, C., Jia, G., Hou, G.,
Dai, Q., Zhang, W.,
Zheng, G., Jian, X.,
Yang, C.G., Cui, Q., He,
C.

Iron-catalysed oxidation
intermediates captured in
a DNA repair dioxygenase.

2010 1.51
3o1p_1.pdb Yi, C., Jia, G., Hou, G.,
Dai, Q., Zhang, W.,
Zheng, G., Jian, X.,
Yang, C.G., Cui, Q., He,
C.

Iron-catalysed oxidation
intermediates captured in
a DNA repair dioxygenase.

2010 1.51
3oqg.pdb Sokolowska, M.,
Czapinska, H., Bochtler,
M.

Hpy188I-DNA pre- and
post-cleavage
complexes--snapshots of
the GIY-YIG nuclease
mediated catalysis.

2011 1.75
3osn.pdb Pence, M.G., Choi, J.Y.,
Egli, M., Guengerich,
F.P.

Structural Basis for
Proficient Incorporation
of dTTP Opposite
O6-Methylguanine by Human
DNA Polymerase {iota}.

2010 1.9
3pv8.pdb Wang, W., Hellinga, H.W.,
Beese, L.S.

Structural evidence for
the rare tautomer
hypothesis of spontaneous
mutagenesis.

2011 1.52

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