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PDB file Author(s) Title Date Resolution, Å
1orn.pdb Fromme, J.C., Verdine,
G.L.

Structure of a Trapped
Endonuclease III-DNA
Covalent Intermediate

2003 1.70
1qna.pdb Patikoglou, G.A., Kim,
J.L., Sun, L., Yang,
S.H., Kodadek, T.,
Burley, S.K.

TATA element recognition
by the TATA box-binding
protein has been
conserved throughout
evolution.

1999 1.80
1qum.pdb D.J.Hosfield, Y.Guan,
B.J.Haas, R.P.Cunningham,
J.A.Tainer

Structure of the DNA
Repair Enzyme
Endonuclease IV and its
DNA Complex: Double-
Nucleotide Flipping at
Abasic Sites and
Three-Metal-Ion Catalysis

1999 1.55
1rh6.pdb Sam, M.D., Cascio, D.,
Johnson, R.C., Clubb,
R.T.

Crystal structure of the
excisionase-DNA complex
from bacteriophage
lambda.

2004 1.70
1sx5.pdb Horton, N.C., Perona,
J.J.

DNA cleavage by EcoRV
endonuclease: Two metal
ions in three metal ion
binding sites

2004 1.50
1tdz.pdb Coste, F., Ober, M.,
Carell, T., Boiteux, S.,
Zelwer, C., Castaing, B.

Structural basis for the
recognition of the FapydG
lesion
(2.6-diamino-4-hydroxy-5-formamidopyrimidine)
by
formamidopyrimidine-DNA
glycosylase.

2004 1.80
1tro.pdb Z.Otwinowski,
R.W.Schevitz, R.-G.Zhang,
C.L.Lawson,
A.J.Joachimiak,
R.Marmorstein, B.F.Luisi,
P.B.Sigler

Crystal Structure of Trp
Repressor Operator
Complex at Atomic
Resolution

1988 1.90
1wte.pdb Hashimoto, H., Shimizu,
T., Imasaki, T., Kato,
M., Shichijo, N., Kita,
K., Sato, M.

Crystal structures of
type II restriction
endonuclease EcoO109I and
its complex with cognate
DNA

2004 1.90
1xyi.pdb Chen, C.-Y., Ko, T.-P.,
Lin, T.-W., Chou, C.-C.,
Chen, C.-J., Wang,
A.H.-J.

Probing the DNA kink
structure induced by the
hyperthermophilic
chromosomal protein Sac7d

2005 1.45
1zs4.pdb Jain, D., Kim, Y.,
Maxwell, K.L., Beasley,
S., Zhang, R., Gussin,
G.N., Edwards, A.M.,
Darst, S.A.

Crystal Structure of
Bacteriophage lambdacII
and Its DNA Complex.

2005 1.70
2a07.pdb Stroud, J.C., Wu, Y.,
Bates, D.L., Han, A.,
Nowick, K., Paabo, S.,
Tong, H., Chen, L.

Structure of the Forkhead
Domain of FOXP2 Bound to
DNA.

2006 1.90
2bop.pdb R.S.Hegde, S.R.Grossman,
L.A.Laimins, P.B.Sigler

Crystal Structure at 1.7
Angstroms of the Bovine
Papillomavirus-1 E2
DNA-Binding Domain Bound
to its DNA Target

1992 1.70
2c7p.pdb Neely, R.K., Daujotyte,
D., Grazulis, S.,
Magennis, S.W., Dryden,
D.T., Klimasauskas, S.,
Jones, A.C.

Time-resolved
fluorescence of
2-aminopurine as a probe
of base flipping in
M.HhaI-DNA complexes.

2005 1.70
2e42.pdb Tahirov, T.H.,
Inoue-Bungo, T., Sato,
K., Shiina, M., Hamada,
K., Ogata, K.

Structural Basis for
Flexible Base Recognition
by C/Ebpbeta

- 1.8
2ea0.pdb Golan, G., Zharkov, D.O.,
Grollman, A.P., Shoham,
G.

Active site plasticity of
endonuclease VIII:
Conformational changes
compensating for
different substrate and
mutations of critical
residues

- 1.4
2ea0_1.pdb Golan, G., Zharkov, D.O.,
Grollman, A.P., Shoham,
G.

Active site plasticity of
endonuclease VIII:
Conformational changes
compensating for
different substrate and
mutations of critical
residues

- 1.4
2fmp.pdb Golan, G., Zharkov, D.O.,
Grollman, A.P., Shoham,
G.

Active site plasticity of
endonuclease VIII:
Conformational changes
compensating for
different substrate and
mutations of critical
residues

- 1.4
2g1p.pdb Horton, J.R., Liebert,
K., Bekes, M., Jeltsch,
A., Cheng, X.

Structure and substrate
recognition of the
Escherichia coli DNA
adenine
methyltransferase.

2006 1.89
2hos.pdb Simon, M.D., Feldman,
M.E., Rauh, D., Maris,
A.E., Wemmer, D.E.,
Shokat, K.M.

Structure and properties
of a re-engineered
homeodomain protein-DNA
interface.

2006 1.90
2ih2.pdb Lenz, T., Scheidig, A.J.,
Weinhold, E.

Influence of the target
base partner on the
methylation rate of the
adenine-specific DNA
methyltransferase M.TaqI

- 1.61
2ih2_1.pdb Lenz, T., Scheidig, A.J.,
Weinhold, E.

Influence of the target
base partner on the
methylation rate of the
adenine-specific DNA
methyltransferase M.TaqI

- 1.61
2nq9.pdb Garcin, E.D., Hosfield,
D.J., Desai, S.A., Haas,
B.J., Bjoras, M.,
Cunningham, R.P., Tainer,
J.A.

DNA apurinic-apyrimidinic
site binding and excision
by endonuclease IV.

2008 1.42
2nq9_1.pdb Garcin, E.D., Hosfield,
D.J., Desai, S.A., Haas,
B.J., Bjoras, M.,
Cunningham, R.P., Tainer,
J.A.

DNA apurinic-apyrimidinic
site binding and excision
by endonuclease IV.

2008 1.42
2o4a.pdb Yamasaki, K., Akiba, T.,
Yamasaki, T., Harata, K.

Structural basis for
recognition of the matrix
attachment region of DNA
by transcription factor
SATB1

2007 1.75
2oaa.pdb Kaus-Drobek, M.,
Czapinska, H.,
Sokolowska, M.,
Tamulaitis, G.,
Szczepanowski, R.H.,
Urbanke, C., Siksnys, V.,
Bochtler, M.

Restriction endonuclease
MvaI is a monomer that
recognizes its target
sequence asymmetrically.

2007 1.50

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